2023
Bogan SN, Johns J, Griffiths JS, Davenport D, Smith SJ, Schaal SM, Downey-Wall A, Lou RN, Lotterhos K, Guidry ME, Rivera HE, McGirr JA, Puritz JB, Roberts SB, Silliman K. A dynamic web resource for robust and reproducible genomics in nonmodel species: marineomics.io Methods in Ecology and Evolution link
2021
Richards EJ,McGirr JA, Wang JR, St. John ME, Poelstra JW, Solano MJ, O’Connell DC, Turner BJ, Martin CH. A vertebrate adaptive radiation is assembled from an ancient and disjunct spatiotemporal landscape. PNAS link
2020
McGirr JA and Martin CH. Few fixed variants between trophic specialist pupfish species reveal candidate cis-regulatory alleles underlying rapid craniofacial divergence. Molecular Biology and Evolution pdf
McGirr JA and Martin CH. Ecological divergence in sympatry causes gene misexpression in hybrids. Molecular Ecology pdf
2019
McGirr JA and Martin CH. Hybrid gene misregulation in multiple developing tissues within a recent adaptive radiation of Cyprinodon pupfishes. PLoS One pdf
Martin CH, McGirr JA, Richards EJ, St. John ME. How to investigate the origins of novelty: insights gained from genetic, behavioral, and fitness perspectives. Integrative Organismal Biology pdf
St. John ME, McGirr JA, and Martin CH. The behavioral origins of novelty: did increased aggression lead to scale-eating in pupfishes? Behavioral Ecology pdf
2018
McGirr JA and Martin CH. Parallel evolution of gene expression between trophic specialists despite divergent genotypes and morphologies. Evolution Letters pdf
Turissini DA, McGirr JA, Patel SS, Matute DR. The rate of evolution of postmating-prezygotic reproductive isolation in Drosophila. Molecular Biology and Evolution pdf
2017
McGirr JA and Martin CH. Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes. Molecular Biology and Evolution. Molecular Biology and Evolution pdf
McGirr JA, Johnson LM, Kelly W, Markow TA, Bono JM. Reproductive isolation among Drosophila arizonae from geographically isolated regions of North America. Evolutionary Biology pdf